 Estimation of secondary household attack rates for emergent spike L452R SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco. Clin Infect Dis. 2021
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 Performance Characteristics of a Rapid SARS-CoV-2 Antigen Detection Assay at a Public Plaza Testing Site in San Francisco J. of Infect. Disease, 2020
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 Rapid deployment of SARS-CoV-2 testing: The CLIAHUB PLOS Pathogens, 2020
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 Community Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 Disproportionately Affects the Latinx Population During Shelter-in-Place in San Francisco Infectious Disease Society of America, 2020
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 IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring Oxford Academic, 2020
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 Temporal airway microbiome changes related to ventilator associated pneumonia in children European Respiratory Journal, 2020
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 ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens Cell Reports Medicine, 2020
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|  The Long March is a simple technique for extending the amount of coverage with short read sequencers, such as Solexa (Illumina). We have demonstrated the utility of the technique using the malaria transcriptome and serum from a hepatitis B positive patient as an example. Long March Supplemental Data |
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