Experimental induction of proventricular dilatation disease in cockatiels inoculated with brain homogenates containing AVB 4.
Gancz AY, Kistler AL, Greninger AL, Farnoushi Y, Mechani S, Perl S, Berkowitz A, Perez N, Clubb S, DeRisi JL, Ganem D, Lublin A

Virol J. 2009 Jul 9;6:100

The complete genome of klassevirus - a novel picornavirus in pediatric stool.
Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, DeRisi JL

Virol J. 2009 Jun 18;6:82

Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent
Amy L Kistler , Ady Gancz , Susan Clubb , Peter Skewes-Cox , Kael Fischer , Katherine Sorber , Charles Y. Chiu , Avishai Lublin , Sara Mechani , Yigal Farnoushi , Alexander Greninger , Christopher C. Wen , Scott B. Karlene , Don Ganem and Joseph L. DeRisi

Virology Journal 2008

The Long March: A Sample Preparation Technique that Enhances Contig Length and Coverage by High-Throughput Short-Read Sequencing
Katherine Sorber1#, Charles Chiu1,4#, Dale Webster1,2¶, Michelle Dimon1,2¶, J. Graham Ruby1, Armin Hekele3, Joseph L. DeRisi1,5*

PLoS ONE 2008

Experimental Malaria Infection Triggers Early Expansion of Natural Killer Cells
Charles C. Kim, Sunil Parikh, Joseph C. Sun, Alissa Myrick, Lewis L. Lanier, Philip J. Rosenthal, and Joseph L. DeRisi*

Infect. Immun. 2008

Identification of cardioviruses related to Theilers murine encephalomyelitis virus in human infections.
Chiu CY, Greninger AL, Kanada K, Kwok T, Fischer KF, Runckel C, Louie JK, Glaser CA, Yagi S, Schnurr DP, Haggerty TD, Parsonnet J, Ganem D, Derisi JL.

PNAS. 2008

Dynamics and design principles of a basic regulatory architecture controlling metabolic pathways.
Chin CS, Chubukov V, Jolly ER, DeRisi J, Li H.

PLoS Biol. 2008

N-terminal processing of proteins exported by malaria parasites.
Chang HH, Falick AM, Carlton PM, Sedat JW, DeRisi JL, Marletta MA.

Mol Biochem Parasitol. 2008

Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children.
Chiu CY, Urisman A, Greenhow TL, Rouskin S, Yagi S, Schnurr D, Wright C, Drew WL, Wang D, Weintrub PS, Derisi JL, Ganem D.

J Pediatr. 2008

Whole-genome analysis of mRNA decay in P.falciparum reveals a global lengthening of mRNA half-life
Jennifer Shock, Kael Fischer and Joseph L DeRisi

Genome Biology 2007

Pan-Viral Screening of Respiratory Tract Infections in Adults with and without Asthma Reveals Unexpected Diversity
Amy Kistler, Pedro Avila, Silvi Rouskin, David Wang, Theresa Ward, Shigeo Yagi, David Schnurr, Don Ganem, Joseph DeRisi and Homer Boushey

JID 2007

Diagnosis of a Critical Respiratory Illness from Human Metapneumovirus Using a Pan-Viral Microarray
Chiu, Alizadeh, Rouskin, Merker, Yeh, Yagi, Schnurr, Patterson, Ganem, Derisi

J Clin Micro 2007

Genome-wide diversity and selective pressure in the human rhinovirus
Amy L Kistler, Dale R Webster, Silvi Rouskin, Vince Magrini, Joel J Credle, David P Schnurr, Homer A Boushey, Elaine R Mardis, Hao Li, Joseph L DeRisi

Virology Journal 2007

Cis-acting determinants of asymmetric, cytoplasmic RNA transport.
Jambhekar A, Derisi JL

RNA. 2007

Gene expression patterns during adaptation of a parasite helminth to different environmental niches
Jolly ER, Chin CS, Miller S, Baghat MM, Lim KC, DeRisi J, McKerrow JH.

Genome Biol 2007

An infectious retrovirus susceptible to an IFN antiviral pathway from human prostate tumors.
Dong B, Kim S, Hong S, Das Gupta J, Malathi K, Klein EA, Ganem D, DeRisi JL, Chow SA, Silverman RH

PNAS 2007

A Bayesian network driven approach to model the transcriptional response to NO in S cerevisiae
Zhu J, Jambhekar A, Sarver A, DeRisi J.

PLoS ONE 2006

Microarray detection of human parainfluenzavirus-4 infection associated with respiratory failure
Chiu CY, Rouskin S, Koshy A, Urisman A, Fischer K, Yagi S, Schnurr D, Eckburg PB, Tompkins LS, Blackburn BG, Merker JD, Patterson BK, Ganem D, DeRisi JL

Clin Infect Dis 2006

Identification of a novel gammaretrovirus in prostate tumors of patients homozygous for R462Q RNASEL variant
Urisman A, Molinaro RJ, Fischer N, Plummer SJ, Casey G, Klein EA, Malathi K, Magi-Galluzzi C, Tubbs RR, Ganem D, Silverman RH, DeRisi JL

PLoS Pathogen 2006

Searching for new antimalarial therapeutics amongst known drugs.
Weisman JL, Liou AP, Shelat AA, Cohen FE, Guy RK, DeRisi JL.

Chem Biol Drug Des. 2006

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise.
Newman JR, Ghaemmaghami S, Ihmels J, Breslow DK, Noble M, DeRisi JL, Weissman JS.

Nature. 2006

Tetracyclines specifically target the apicoplast of the malaria parasite P. falciparum
Dahl EL, Shock JL, Shenai BR, Gut J, DeRisi JL, Rosenthal PJ.

Antimicrobial Agts Chemother 2006

Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains
Llinas M, Bozdech Z, Wong ED, Adai AT, DeRisi JL

Nucl Acids Res 2006

Incorporation of an intramolecular hydrogen-bonding motif in the side chain of 4-aminoquinolines enhances activity against drug-resistant P. falciparum.
Madrid PB, Liou AP, DeRisi JL, Guy RK.

J Med Chem. 2006

Genome-wide map of DNA synthesis in Sc reveals mechanisms preventing reinitiation of DNA replication are not redundant.
Green BM, Morreale RJ, Ozaydin B, DeRisi JL, Li JJ

Mol Biol Cell 2006

Unbiased selection of localization elements reveals cis-acting determinants of mRNA bud localization in Saccharomyces cerevisiae
Jambhekar A, McDermott K, Sorber K, Shepard KA, Vale RD, Takizawa PA, DeRisi JL

Proc Natl Acad Sci U S A. 2005

Parallel synthesis of 9-aminoacridines and evaluation against chloroquine-resistant falciparum
Anderson MO, Sherrill J, Madrid PB, Liou AP, Weisman JL, DeRisi JL, Guy RK.

Bioorg Med Chem 2006

Genome-wide identification of genes upregulated at onset of gametocytogenesis in P. falciparum
Silvestrini F, Bozdech Z, Lanfrancotti A, Di Giulio E, Bultrini E, Picci L, DeRisi JL, Pizzi E, Alano P.

Mol Biochem Parasitol 2005

Fzf1p regulates an inducible response to nitrosative stress in Saccharomyces cerevisiae
Sarver A, DeRisi J.

Mol Biol Cell 2005

Synthesis of ring-substituted 4-aminoquinolines and evaluation of their antimalarial activities
Madrid PB, Sherrill J, Liou AP, Weisman JL, DeRisi JL, Guy RK.

Bioorg Med Chem Lett 2005

Genome-scale approaches for discovering novel nonconventional splicing substrates of the Ire1 nuclease
Niwa M, Patil CK, DeRisi J, Walter P.

Genome Biol 2005

Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae
Galgoczy DJ, Cassidy-Stone A, Llinás M, O'Rourke SM, Herskowitz I, DeRisi JL, Johnson AD.

Proc Natl Acad Sci U S A. 2004

Pernicious plans revealed: Plasmodium falciparum genome wide expression analysis
Llinas M, DeRisi JL.

Curr Opin Microbiol 2004

Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae
Glynn EF, Megee PC, Yu HG, Mistrot C, Unal E, Koshland DE, DeRisi JL, Gerton JL.

PLoS Biol 2004

The kinetochore is an enhancer of pericentric cohesin binding
Weber SA, Gerton JL, Polancic JE, DeRisi JL, Koshland D, Megee PC.

PLoS Biol 2004

Parallel synthesis of 9-aminoacridines and their evaluation against chloroquine-resistant Plasmodium falciparum.
Anderson MO, Sherrill J, Madrid PB, Liou AP, Weisman JL, DeRisi JL, Guy RK.

Bioorg Med Chem. 2006

Viral discovery and sequence recovery using DNA microarrays.
Wang D, Urisman A, Liu YT, Springer M, Ksiazek TG, Erdman DD, Mardis ER, Hickenbotham M, Magrini V, Eldred J, Latreille JP, Wilson RK, Ganem D, DeRisi JL.

PLoS Biology 2003

Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis.
Shepard KA, Gerber AP, Jambhekar A, Takizawa PA, Brown PO, Herschlag D, DeRisi JL, Vale RD.

Proc Natl Acad Sci U S A. 2003

The transcriptome of the intraerythrocytic developmental cycle of P falciparum
Bozdech Z, Llinas M, Pulliam BL, Wong ED, Zhu J, DeRisi JL.

PLoS Biol 2003

Characterization of a novel coronavirus associated with severe acute respiratory syndrome.
Rota PA, Oberste MS, Monroe SS, Nix WA, Campagnoli R, Icenogle JP, Peñaranda S, Bankamp B, Maher K, Chen MH, Tong S, Tamin A, Lowe L, Frace M, DeRisi JL, Chen Q, Wang D, Erdman DD, Peret TC, Burns C, Ksiazek TG, Rollin PE, Sanchez A, Liffick S, Holloway B, Limor J, McCaustland K, Olsen-Rasmussen M, Fouchier R, Günther S, Osterhaus AD, Drosten C, Pallansch MA, Anderson LJ, Bellini WJ.

Science. 2003

A novel coronavirus associated with severe acute respiratory syndrome.
Ksiazek TG, Erdman D, Goldsmith CS, Zaki SR, Peret T, Emery S, Tong S, Urbani C, Comer JA, Lim W, Rollin PE, Dowell SF, Ling AE, Humphrey CD, Shieh WJ, Guarner J, Paddock CD, Rota P, Fields B, DeRisi J, Yang JY, Cox N, Hughes JM, LeDuc JW, Bellini WJ, Anderson LJ

N Engl J Med 2003

Telomeric protein distributions and remodeling through the cell cycle in Saccharomyces cerevisiae.
Smith CD, Smith DL, DeRisi JL, Blackburn EH.

Mol Biol Cell. 2003

Expression profiling of the schizont and trophozoite stages of P. falciparum with a long-oligonucleotide microarray
Bozdech Z, Zhu J, Joachimiak MP, Cohen FE, Pulliam B, DeRisi JL.

Genome Biol 2003

A role for the protease falcipain 1 in host cell invasion by the human malaria parasite.
Greenbaum DC, Baruch A, Grainger M, Bozdech Z, Medzihradszky KF, Engel J, DeRisi J, Holder AA, Bogyo M.Scienc

Science. 2002

Microarray-based detection and genotyping of viral pathogens
Wang D, Coscoy L, Zylberberg M, Avila PC, Boushey HA, Ganem D, DeRisi JL

Proc Natl Acad Sci U S A. 2002

Modulation of host gene expression by the constitutively active G protein-coupled receptor of Kaposi's sarcoma-associated herpesvirus.
Polson AG, Wang D, DeRisi J, Ganem D.

Cancer Res. 2002

The genome-wide expression response to telomerase deletion in Saccharomyces cerevisiae
Nautiyal S, DeRisi JL, Blackburn EH.

PNAS 2002

Mnd1p: an evolutionarily conserved protein required for meiotic recombination.
Gerton JL, DeRisi JL.

Proc Natl Acad Sci U S A. 2002

DNA microarrays for malaria.
Rathod PK, Ganesan K, Hayward RE, Bozdech Z, DeRisi JL.

Trends Parasitol. 2002

Chemical inhibition of the Pho85 cyclin-dependent kinase reveals a role in the environmental stress response
Carroll AS, Bishop AC, DeRisi JL, Shokat KM, O'Shea EK

Proc Natl Acad Sci U S A. 2001

Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays
Miki R, Kadota K, Bono H, Mizuno Y, Tomaru Y, Carninci P, Itoh M, Shibata K, Kawai J, Konno H, Watanabe S, Sato K, Tokusumi Y, Kikuchi N, Ishii Y, Hamaguchi Y, Nishizuka I, Goto H, Nitanda H, Satomi S, Yoshiki A, Kusakabe M, DeRisi JL, Eisen MB, Iyer VR, Brown PO, Muramatsu M, Shimada H, Okazaki Y, Hayashizaki Y.

Proc Natl Acad Sci U S A. 2001

Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under differing nitrogen conditions.
Backhus LE, DeRisi J, Bisson LF.

FEMS Yeast Res. 2001

New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis.
Ogawa N, DeRisi J, Brown PO.

Mol Biol Cell. 2000

Plasma membrane compartmentalization in yeast by messenger RNA transport and a septin diffusion barrier
Takizawa PA, DeRisi JL, Wilhelm JE, Vale RD

Science. 2000

Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source.
Kuhn KM, DeRisi JL, Brown PO, Sarnow P.

Mol Cell Biol. 2001

Inaugural article: global mapping of meiotic recombination hotspots and coldspots in the yeast S. cerevisiae
Gerton JL, DeRisi J, Shroff R, Lichten M, Brown PO, Petes TD.

PNAS 2000

Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays.
Khodursky AB, Peter BJ, Schmid MB, DeRisi J, Botstein D, Brown PO, Cozzarelli NR.

Proc Natl Acad Sci U S A. 2000

Genome microarray analysis of transcriptional activation in multidrug resistance yeast mutants.
DeRisi J, van den Hazel B, Marc P, Balzi E, Brown P, Jacq C, Goffeau A.

FEBS Lett. 2000

Shotgun DNA microarrays and stage-specific gene expression in Plasmodium falciparum malaria.
Hayward RE, Derisi JL, Alfadhli S, Kaslow DC, Brown PO, Rathod PK.

Mol Microbiol. 2000

Exploring drug-induced alterations in gene expression in Mycobacterium tuberculosis by microarray hybridization.
Wilson M, DeRisi J, Kristensen HH, Imboden P, Rane S, Brown PO, Schoolnik GK

Proc Natl Acad Sci U S A. 1999

Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae
Lutfiyya LL, Iyer VR, DeRisi J, DeVit MJ, Brown PO, Johnston M.

Genetics 1998

Drug target validation and identification of secondary drug target effects using DNA microarrays.
Marton MJ, DeRisi JL, Bennett HA, Iyer VR, Meyer MR, Roberts CJ, Stoughton R, Burchard J, Slade D, Dai H, Bassett DE Jr, Hartwell LH, Brown PO, Friend SH.

Nature Med 1998

The transcriptional program of sporulation in budding yeast
Chu S, DeRisi J, Eisen M, Mulholland J, Botstein D, Brown PO, Herskowitz I.

Science 1998

Effects of mutations in residues near the active site of HIV type 1 integrase on specific enzyme-substrate interactions.
Gerton JL, Ohgi S, Olsen M, DeRisi J, Brown PO.

J Virology 1998

Yeast microarrays for genome wide parallel genetic and gene expression analysis.
Lashkari DA, DeRisi JL, McCusker JH, Namath AF, Gentile C, Hwang SY, Brown PO, Davis RW.

PNAS 1997

Exploring the metabolic and genetic control of gene expression on a genomic scale.
DeRisi JL, Iyer VR, Brown PO

Science. 1997

Use of a cDNA microarray to analyse gene expression patterns in human cancer
DeRisi J, Penland L, Brown PO, Bittner ML, Meltzer PS, Ray M, Chen Y, Su YA, Trent JM.

Nature Genetics 1996

Bead-shift isolation of protein--DNA complexes on a 5S RNA gene
Peck LJ, Bartilson M, DeRisi JL.

Nucleic Acids Res. 1994