 Experimental induction of proventricular dilatation disease in cockatiels inoculated with brain homogenates containing AVB 4. Virol J. 2009 Jul 9;6:100
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 The complete genome of klassevirus - a novel picornavirus in pediatric stool. Virol J. 2009 Jun 18;6:82
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 Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent Virology Journal 2008
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 The Long March: A Sample Preparation Technique that Enhances Contig Length and Coverage by High-Throughput Short-Read Sequencing PLoS ONE 2008
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 Experimental Malaria Infection Triggers Early Expansion of Natural Killer Cells Infect. Immun. 2008
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 Identification of cardioviruses related to Theilers murine encephalomyelitis virus in human infections. PNAS. 2008
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|  VersaCount is a simple application to assist with the counting of cells by microscopy. When used with a numeric keypad, it can significantly increase counting efficiency when compared with a traditional clicker. Although it was designed for malaria work, it can be customized for a wide variety of cell counting applications. VersaCount was written by Charlie Kim. Download VersaCount v1.0 |
 DNA microarrays may be used to identify microbial species present in environmental and clinical samples. However, automated tools for reliable species identification based on observed microarray hybridization patterns are lacking. We present an algorithm, E-Predict, for microarray-based species identification. E-Predict Software Download Page |
 ArrayOligoSelector (AOS) is an open source program developed by Jingchun Zhu for the purpose of systematically designing gene-specific long oligonucleotide probes for entire genomes. For each open reading frame, the program optimizes oligo selection based upon several parameters, including uniqueness, complexity, secondary structure, GC content, and 3' end proximity.
AOS also is hosted at SourceForge. This site contains documentation and a user-friendly how-to.
For more information, download an excerpt from Jing's thesis describing the AOS algorithm and implementation here.Download AOS v3.8.4 |
 ArrayMaker 2 provides high performance robotic control of microarrayer robots with an incredibly intuitive, easy to use interface. ArrayMaker 2 is optimized for use with the new generation of ultra fast linear servo driven arrayers, yet it is backwards compatible with the original MGuide style of ball-screw driven arrayers. Download ArrayMaker v2.60 |
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ExpressionNet is a program written by Jingchun Zhu that uses Bayesian network learning algorithms to explore relationships among random variables to generate network models. The software has been used to study the transcriptional response to environmental perturbations in budding yeast. Details of the program and the study of yeast transcription using Bayesian Networks was published in PLoS ONE.