 Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance Biology Open, 2018
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 Whole-Genome mRNA Gene Expression Differs Between Patients With and Without Delirium Sage Journals, 2018
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 Avian keratin disorder of Alaska black-capped chickadees is associated with Poecivirus infection Virology Journal, 2018
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 Low-Cost Touchscreen Driven Programmable Dual Syringe Pump for Life Science Applications Science Direct, 2018
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 Metagenomic next-generation sequencing reveals Miamiensis avidus (Ciliophora: Scuticociliatida) in the 2017 epizootic of leopard sharks (Triakis semifasciata) in San Francisco Bay, California BioRxiv, 2018
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 Chronic Meningitis Investigated via Metagenomic Next-Generation Sequencing JAMA Network, 2018
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 Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients American Journal of Respiratory and Critical Care Medicine, 2018
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|  We are pleased to release HMMSplicer to the community. This open-source software package discovers splice sites in high throughput sequencing datasets without using gene models. HMMSplicer can also be used to find non-canonical junctions as well. HMMSplicer was benchmarked on publicly available A. thaliana, H. sapiens, and P. falciparum datasets and performs well on all genomes. Information about the datasets tested, including the exact command parameters and the final results, is provided. HMMSplicer is implemented in Python and is freely available for all. HMMSplicer was written by Michelle Dimon. Manuscript is in press at PLoS ONE. Learn more and download HMMSplicer here! |
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