Detection of Pneumonia Pathogens from PlasmaCell-Free DNAAmerican Journal of Respiratory Critical Care, 2020
Pan-viral serology implicates enteroviruses in acute flaccid myelitisNature Medicine, 2020
Plasmodium falciparum Resistance to a Lead Benzoxaborole Due to Blocked Compound Activation and Altered Ubiquitination or SumoylationAmerican Society of Microbiology, 2020
Exploratory analysis of the potential for advanced diagnostic testing to reduce healthcare expenditures of patients hospitalized with meningitis or encephalitisPLoS One, 2020
Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized PathogensAmerican Society of Microbiology, 2019
Exploratory proteomic analysis implicates thealternative complement cascade in primary CNSvasculitisNeurology, 2019
An exploration of ambigrammatic sequences in narnavirusesScientific Reports, 2020
We are pleased to release HMMSplicer to the community. This open-source software package discovers splice sites in high throughput sequencing datasets without using gene models. HMMSplicer can also be used to find non-canonical junctions as well. HMMSplicer was benchmarked on publicly available A. thaliana, H. sapiens, and P. falciparum datasets and performs well on all genomes. Information about the datasets tested, including the exact command parameters and the final results, is provided. HMMSplicer is implemented in Python and is freely available for all. HMMSplicer was written by Michelle Dimon. Manuscript is in press at PLoS ONE.Learn more and download HMMSplicer here!