Metagenomic DNA Sequencing for the Diagnosis of Intraocular InfectionsAmerican Academy of Ophthamology, 2017
Differential disease susceptibility in experimentally reptarenavirus infected boa constrictors and ball pythonsJournal of Virology, 2017
A Herpesviral induction of RAE-1 NKG2D ligand expression occurs through release of HDAC mediated repressioneLIFE, 2016
Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogensGenome Medicine, 2016
Acute West Nile virus meningoencephalitis diagnosed via metagenomic deep sequencing of cerebrospinal fluid in a renal transplant patientAmerican Journal of Transplantation, 2016
Multiplexed Metagenomic Deep Sequencing To Analyze the Composition of High-Priority Pathogen ReagentsASM mSystems, 2016
Novel Picornavirus Associated with Avian Keratin Disorder in Alaskan BirdsmBio 2016
We are pleased to release HMMSplicer to the community. This open-source software package discovers splice sites in high throughput sequencing datasets without using gene models. HMMSplicer can also be used to find non-canonical junctions as well. HMMSplicer was benchmarked on publicly available A. thaliana, H. sapiens, and P. falciparum datasets and performs well on all genomes. Information about the datasets tested, including the exact command parameters and the final results, is provided. HMMSplicer is implemented in Python and is freely available for all. HMMSplicer was written by Michelle Dimon. Manuscript is in press at PLoS ONE.Learn more and download HMMSplicer here!