Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence toleranceBiology Open, 2018
Whole-Genome mRNA Gene Expression Differs Between Patients With and Without DeliriumSage Journals, 2018
Avian keratin disorder of Alaska black-capped chickadees is associated with Poecivirus infectionVirology Journal, 2018
Low-Cost Touchscreen Driven Programmable Dual Syringe Pump for Life Science ApplicationsScience Direct, 2018
Metagenomic next-generation sequencing reveals Miamiensis avidus (Ciliophora: Scuticociliatida) in the 2017 epizootic of leopard sharks (Triakis semifasciata) in San Francisco Bay, CaliforniaBioRxiv, 2018
Chronic Meningitis Investigated via Metagenomic Next-Generation SequencingJAMA Network, 2018
Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant PatientsAmerican Journal of Respiratory and Critical Care Medicine, 2018
We are pleased to release HMMSplicer to the community. This open-source software package discovers splice sites in high throughput sequencing datasets without using gene models. HMMSplicer can also be used to find non-canonical junctions as well. HMMSplicer was benchmarked on publicly available A. thaliana, H. sapiens, and P. falciparum datasets and performs well on all genomes. Information about the datasets tested, including the exact command parameters and the final results, is provided. HMMSplicer is implemented in Python and is freely available for all. HMMSplicer was written by Michelle Dimon. Manuscript is in press at PLoS ONE.Learn more and download HMMSplicer here!