Towards precision quantification of contamination in metagenomic sequencing experimentsMicrobiome, 2019
Metagenomic comparison of tracheal aspirate and mini-bronchial alveolar lavage for assessment of respiratory microbiotaAmerican Journal of Physiology, 2019
Miniaturization and optimization of 384-well compatible RNA sequencing library preparationPLOS One, 2019
Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adultsPNAS, 2018
Clinicopathology conference: 41‐year‐old woman with chronic relapsing meningitisAnnuls of Neurology, 2018
The Plasmodium falciparum cytoplasmic translation apparatus: a promising therapeutic target not yet exploited by clinically approved anti-malarialsMalaria Journal, 2018
Ebola virus, but not Marburg virus, replicates efficiently and without required adaptation in snake cellsVirus Evolution, 2018
We are pleased to release HMMSplicer to the community. This open-source software package discovers splice sites in high throughput sequencing datasets without using gene models. HMMSplicer can also be used to find non-canonical junctions as well. HMMSplicer was benchmarked on publicly available A. thaliana, H. sapiens, and P. falciparum datasets and performs well on all genomes. Information about the datasets tested, including the exact command parameters and the final results, is provided. HMMSplicer is implemented in Python and is freely available for all. HMMSplicer was written by Michelle Dimon. Manuscript is in press at PLoS ONE.Learn more and download HMMSplicer here!