 A Novel Cause of Chronic Viral Meningoencephalitis: Cache Valley Virus Annals of Neurology, 2017
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 Zika virus cell tropism in the developing human brain and inhibition by azithromycin PNAS, 2017
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 Plasmid-free CRISPR/Cas9 genome editing in Plasmodium falciparum confirms mutations conferring resistance to the dihydroisoquinolone clinical candidate SJ733 PLoS One, 2017
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 Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections American Academy of Ophthamology, 2017
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 Differential disease susceptibility in experimentally reptarenavirus infected boa constrictors and ball pythons Journal of Virology, 2017
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 A Herpesviral induction of RAE-1 NKG2D ligand expression occurs through release of HDAC mediated repression eLIFE, 2016
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 Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens Genome Medicine, 2016
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|  We are pleased to release HMMSplicer to the community. This open-source software package discovers splice sites in high throughput sequencing datasets without using gene models. HMMSplicer can also be used to find non-canonical junctions as well. HMMSplicer was benchmarked on publicly available A. thaliana, H. sapiens, and P. falciparum datasets and performs well on all genomes. Information about the datasets tested, including the exact command parameters and the final results, is provided. HMMSplicer is implemented in Python and is freely available for all. HMMSplicer was written by Michelle Dimon. Manuscript is in press at PLoS ONE. Learn more and download HMMSplicer here! |
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