Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized PathogensAmerican Society of Microbiology, 2019
Exploratory proteomic analysis implicates thealternative complement cascade in primary CNSvasculitisNeurology, 2019
Kelch-like Protein 11 Seminoma-associated Paraneoplastic EncephalitisNEJM 2019
Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised ChildrenOxford Academic, 2019
Towards precision quantification of contamination in metagenomic sequencing experimentsMicrobiome, 2019
Metagenomic comparison of tracheal aspirate and mini-bronchial alveolar lavage for assessment of respiratory microbiotaAmerican Journal of Physiology, 2019
Miniaturization and optimization of 384-well compatible RNA sequencing library preparationPLOS One, 2019
We are pleased to release HMMSplicer to the community. This open-source software package discovers splice sites in high throughput sequencing datasets without using gene models. HMMSplicer can also be used to find non-canonical junctions as well. HMMSplicer was benchmarked on publicly available A. thaliana, H. sapiens, and P. falciparum datasets and performs well on all genomes. Information about the datasets tested, including the exact command parameters and the final results, is provided. HMMSplicer is implemented in Python and is freely available for all. HMMSplicer was written by Michelle Dimon. Manuscript is in press at PLoS ONE.Learn more and download HMMSplicer here!