 Detection of Pneumonia Pathogens from PlasmaCell-Free DNA American Journal of Respiratory Critical Care, 2020
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 Pan-viral serology implicates enteroviruses in acute flaccid myelitis Nature Medicine, 2020
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 Plasmodium falciparum Resistance to a Lead Benzoxaborole Due to Blocked Compound Activation and Altered Ubiquitination or Sumoylation American Society of Microbiology, 2020
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 Exploratory analysis of the potential for advanced diagnostic testing to reduce healthcare expenditures of patients hospitalized with meningitis or encephalitis PLoS One, 2020
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 Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens American Society of Microbiology, 2019
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 Exploratory proteomic analysis implicates thealternative complement cascade in primary CNSvasculitis Neurology, 2019
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 An exploration of ambigrammatic sequences in narnaviruses Scientific Reports, 2020
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|  We are pleased to release HMMSplicer to the community. This open-source software package discovers splice sites in high throughput sequencing datasets without using gene models. HMMSplicer can also be used to find non-canonical junctions as well. HMMSplicer was benchmarked on publicly available A. thaliana, H. sapiens, and P. falciparum datasets and performs well on all genomes. Information about the datasets tested, including the exact command parameters and the final results, is provided. HMMSplicer is implemented in Python and is freely available for all. HMMSplicer was written by Michelle Dimon. Manuscript is in press at PLoS ONE. Learn more and download HMMSplicer here! |
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