 Towards precision quantification of contamination in metagenomic sequencing experiments Microbiome, 2019
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 Metagenomic comparison of tracheal aspirate and mini-bronchial alveolar lavage for assessment of respiratory microbiota American Journal of Physiology, 2019
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 Miniaturization and optimization of 384-well compatible RNA sequencing library preparation PLOS One, 2019
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 Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults PNAS, 2018
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 Clinicopathology conference: 41‐year‐old woman with chronic relapsing meningitis Annuls of Neurology, 2018
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 The Plasmodium falciparum cytoplasmic translation apparatus: a promising therapeutic target not yet exploited by clinically approved anti-malarials Malaria Journal, 2018
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 Ebola virus, but not Marburg virus, replicates efficiently and without required adaptation in snake cells Virus Evolution, 2018
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|  We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++. Its name describes the strategy that it implements for genome assembly: PRICE uses paired-read information to iteratively increase the size of pre-assembled contigs. It was designed to address the challenge of assembling viral genomes that constituted a small minority of the reads within ultra-deep, short-read, metagenomic, shotgun datasets. PRICE has already enabled the discovery of several novel virus genomes from such complex datasets.
The early online edition of the PRICE paper, published in G3, is here.Download PRICE |
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