 Estimation of secondary household attack rates for emergent spike L452R SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco. Clin Infect Dis. 2021
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 Performance Characteristics of a Rapid SARS-CoV-2 Antigen Detection Assay at a Public Plaza Testing Site in San Francisco J. of Infect. Disease, 2020
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 Rapid deployment of SARS-CoV-2 testing: The CLIAHUB PLOS Pathogens, 2020
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 Community Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 Disproportionately Affects the Latinx Population During Shelter-in-Place in San Francisco Infectious Disease Society of America, 2020
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 IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring Oxford Academic, 2020
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 Temporal airway microbiome changes related to ventilator associated pneumonia in children European Respiratory Journal, 2020
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 ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens Cell Reports Medicine, 2020
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|  vFam is a HMMER3 database of profile hidden Markov models (HMMs) built from all the viral proteins present in RefSeq. Use of the vFam database may provide greater sensitivity for the detection of highly divergent viral proteins than the use of traditional alignment tools, such as BLAST. Click here to go to the vFam download page. |
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