The Process - June 2001
Provides a simple overview of the microarray process.
Preparation of Poly-l-Lysine Slides - June 2001
Directions for cleaning and coating slides with poly-l-lysine.
Directions for Printing Arrays
Instructions for Printing Arrays - June 2000
Directions for print run initiation through completion.
Random DNA Amplification - June 2001
Directions for amplifying products for printing on arrays.
cDNA Clone Preparation - June 2000
Protocol for preparation of plasmid DNA containing mammalian cDNA clone.
DNA Precipitation - June 2000
Protocol for precipitating DNA in 96 well plates and transfer to 384 printing plates.
Tips and Tricks
Yeast Expression Analysis - June 2001
Tips and pointers for designing yeast expression experiments.
Yeast Farming - June 2001
Sean O'Rourke's famous yeast farming guide for expression experiments.
Nucleic Acid Preparation
E.coli Total RNA Isolation - October 2000
Protocol for isolation of E.coli total RNA from the Gross Lab.
Yeast Total RNA Isolation - June 2001
Protocol for isolation of yeast total RNA by the hot acid phenol method.
Yeast Poly(A)+ mRNA Isolation - June 2001
Protocol for isolation of yeast poly(A)+ mRNA by the oligo-dT cellulose method.
Human FastTrack mRNA Isolation
Revised protocol for FastTrack 2.0 mRNA extraction from human cells
Human Tumor mRNA Isolation - June 2000
Protocol for extraction of mRNA from human tumors.
Membrane Bound Polysome Isolation - June 2001
Protcol for extraction of mRNA associated with membrane bound polysomes via the gradient method.
Yeast ChIP-on-Chip - June 2001
Protocol for isolation of DNA associated with DNA binding proteins by crosslinking and subsequent immunoprecipitation.
Nucleic Acid Labeling
Reverse Transcription and aa-UTP Labeling of RNA - June 2001
Protocol for making cDNA with aa-dUTP incorporation and labeling cDNA via chemical coupling of fluorescent dyes.
Reverse Transcription and Labeling of Human RNA - June 2000
Protocol for direct incorporation of fluorescent nucleotides into cDNA reverse transcribed from human mRNA.
Modified Eberwine RNA Amplification - June 2000
Protocol for amplifying RNA using a modified "ANTISENSE"(Eberwine) method.
Labeling Genomic DNA Version A - June 2000
Labeling Genomic DNA Version B
Protocols for labeling genomic DNA via direct incorporation or coupling for comparative genomic hybridizations.
Amplification and Labeling of DNA - June 2000
Protocol for amplifying and labeling DNA from ChIP or elsewhere.
Array Post Processing
Post Processing Array - June 2001
Instructions for hydrating and fixing spotted DNA and chemically blocking the poly-l-lysine surface.
Array Hybridization - June 2001
Protocol describing hybridization set up and probe application.
Array Washing - June 2001
Instructions for washing microarrays after hybridization.
Array Scanning - June 2000
An introduction to the Axon GenePix 4000a Microarray Scanner.
Supply Source Sheet - June 2000
A comprehensive list of the supplies you need to run many of the protocols described above.