PRICE Documentation: Independent Quality Filter

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PRICE provides a number of features for dynamically filtering input data across the many cycles of a run based on features such as sequence length, quality, similarity to a reference sequence, etc. However, if a consistent set of filters is to be applied across all of the cycles of a run, a considerable speed advantage can be gained by generating a set of files ahead of time with the filters already applied. The executable PriceSeqFilter provides that functionality, providing access to many of the same features as are accessible through the PriceTI command-line interface.

Command-line Arguments

The various command-line arguments for PRICE SeqFilter are described below. Note that brief descriptions, including current default values, can be accessed at the command line by executing the PRICE SeqFilter with the -h or --help flags.