 Unveiling the proteome-wide autoreactome enables enhanced evaluation of emerging CAR T cell therapies in autoimmunity J Clin Invest 2024
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 Molecular mimicry in multisystem inflammatory syndrome in children Nature Portfolio, 2024
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 Phage Immunoprecipitation-Sequencing Reveals CDHR5 Autoantibodies in Select Patients With Interstitial Lung Disease American College of Rheumatology, 2024
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 Transcobalamin receptor antibodies in autoimmune vitamin B12 central deficiency Sci Tran Med 2024
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 An autoantibody signature predictive for multiple sclerosis Nat Med 2024
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 Field assessment of BinaxNOW antigen tests as COVID-19 treatment entry point at a community testing site in San Francisco during evolving omicron surges PLOS One, 2023
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 Antibodies to repeat-containing antigens in Plasmodium falciparum are exposure-dependent and short-lived in children in natural malaria infections eLife, 2023
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 Dual ankyrinG and subpial autoantibodies in a man with well-controlled HIV infection with steroid-responsive meningoencephalitis: A case report Frontiers, 2023
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 Successful Treatment of Balamuthia mandrillaris Granulomatous Amebic Encephalitis with Nitroxoline Emerging Infectious Diseases, 2023
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 Prolonged silent carriage, genomic virulence potential and transmission between staff and patients characterize a neonatal intensive care unit (NICU) outbreak of methicillin-resistant Staphylococcus aureus (MRSA) Cambridge University Press, 2023
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 Computational pipeline provides mechanistic understanding of Omicron variant of concern neutralizing engineered ACE2 receptor traps Science Direct, 2023
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 Pathobiological signatures of dysbiotic lung injury in pediatric patients undergoing stem cell transplantation Nature Portfolio, 2024
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|  ArrayOligoSelector (AOS) is an open source program developed for the purpose of systematically designing gene-specific long oligonucleotide probes for entire genomes. For each open reading frame, the program optimizes oligo selection based upon several parameters, including uniqueness, complexity, secondary structure, GC content, and 3' end proximity.
Our laboratory has used AOS to generate Plasmodium falciparum oligonucleotide microarrays. Other labs have used AOS for a large variety of organisms, including mouse, human, worms, and yeast.
AOS also is hosted at SourceForge here. This site contains documentation and a user-friendly how-to.
Download an excerpt from Jing's thesis describing the AOS algorithm and implementation here.
Download AOS v3.8.4 |
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